M. Sc. Bioinformatik Maria Schmidt

M. Sc. Bioinformatik Maria Schmidt

PHD STUDENT

Omics bioinformatics for health and systems biology

schmidt@izbi.uni-leipzig.de

+49 (0) 341 - 97 16671

Room: 326

ACADEMIC CAREER

  • BSc degree in Biology, Leipzig University, Germany, 2012
  • MSc degree in Bioinformatics, Leipzig University, 2017

SCIENTIFIC INTERESTS

  • Systems biology and epidemiology of health, diseases and cancer
  • Molecular mechanisms and impact of genomic regulation
  • Data mining and integration of high throughput OMICs data

PUBLICATIONS

2020 (4)

  • B. Fischer, A. M. Sedlmeier, S. Hartwig, C. L. Schlett, W. Ahrens, F. Bamberg, H. Baurecht, H. Becher, K. Berger, H. Binder, B. Bohn, P. R. Carr, S. Castell, C. W. Franzke, J. Fricke, S. Gastell, K. H. Greiser, K. Gunther, L. Jaeschke, R. Kaaks, Y. Kemmling, L. Krist, O. Kuss, N. Legath, W. Lieb, J. Linseisen, M. Loffler, K. B. Michels, R. Mikolajczyk, T. Niedermaier, K. Norman, N. Obi, A. Peters, T. Pischon, T. Schikowski, S. Schipf, B. Schmidt, M. B. Schulze, A. Stang, J. Stojicic, D. Tiller, H. Volzke, S. Waniek, M. F. Leitzmann. [Anthropometric measures in the German National Cohort-more than weight and height]. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2020. 63: 290-300.
  • H. Loeffler-Wirth, M. Schmidt, H. Binder. Covid-19 Transmission Trajectories-Monitoring the Pandemic in the Worldwide Context. Viruses. 2020. 12:
  • M. Nikoghosyan, M. Schmidt, K. Margaryan, H. Loeffler-Wirth, A. Arakelyan, H. Binder. SOMmelier—Intuitive Visualization of the Topology of Grapevine Genome Landscapes Using Artificial Neural Networks. MDPI Journals Genes. 2020. 11: 21.
  • M. Schmidt, H. Loeffler-Wirth, H. Binder. Developmental scRNAseq Trajectories in Gene- and Cell-State Space-The Flatworm Example. Genes (Basel). 2020. 11:

2015 (1)

  • M. Schmid, J. Smith, D. W. Burt, B. L. Aken, P. B. Antin, A. L. Archibald, C. Ashwell, P. J. Blackshear, C. Boschiero, C. T. Brown, S. C. Burgess, H. H. Cheng, W. Chow, D. J. Coble, A. Cooksey, R. P. Crooijmans, J. Damas, R. V. Davis, D. J. de Koning, M. E. Delany, T. Derrien, T. T. Desta, I. C. Dunn, M. Dunn, H. Ellegren, L. Eory, I. Erb, M. Farre, M. Fasold, D. Fleming, P. Flicek, K. E. Fowler, L. Fresard, D. P. Froman, V. Garceau, P. P. Gardner, A. A. Gheyas, D. K. Griffin, M. A. Groenen, T. Haaf, O. Hanotte, A. Hart, J. Hasler, S. B. Hedges, J. Hertel, K. Howe, A. Hubbard, D. A. Hume, P. Kaiser, D. Kedra, S. J. Kemp, C. Klopp, K. E. Kniel, R. Kuo, S. Lagarrigue, S. J. Lamont, D. M. Larkin, R. A. Lawal, S. M. Markland, F. McCarthy, H. A. McCormack, M. C. McPherson, A. Motegi, S. A. Muljo, A. Munsterberg, R. Nag, I. Nanda, M. Neuberger, A. Nitsche, C. Notredame, H. Noyes, R. O'Connor, E. A. O'Hare, A. J. Oler, S. C. Ommeh, H. Pais, M. Persia, F. Pitel, L. Preeyanon, P. Prieto Barja, E. M. Pritchett, D. D. Rhoads, C. M. Robinson, M. N. Romanov, M. Rothschild, P. F. Roux, C. J. Schmidt, A. S. Schneider, M. G. Schwartz, S. M. Searle, M. A. Skinner, C. A. Smith, P. F. Stadler, T. E. Steeves, C. Steinlein, L. Sun, M. Takata, I. Ulitsky, Q. Wang, Y. Wang, others. Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res. 2015. 145: 78-179.

2014 (1)

  • J. C. Dohm, A. E. Minoche, D. Holtgrawe, S. Capella-Gutierrez, F. Zakrzewski, H. Tafer, O. Rupp, T. R. Sorensen, R. Stracke, R. Reinhardt, A. Goesmann, T. Kraft, B. Schulz, P. F. Stadler, T. Schmidt, T. Gabaldon, H. Lehrach, B. Weisshaar, H. Himmelbauer. The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature. 2014. 505: 546-9.

2012 (2)

  • Stephanie Keller-Schmidt, Konstantin Klemm. A Model of macroevolution as a branching Process based on Innovations doi:10.1142/S0219525912500439. Advances in Complex Systems. 2012. 15: 1250043.
  • C. Schmidtke, S. Findeiss, C. M. Sharma, J. Kuhfuss, S. Hoffmann, J. Vogel, P. F. Stadler, U. Bonas. Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions. Nucleic Acids Res. 2012. 40: 2020-31.

2011 (1)

  • J. G. Hengstler, M. Gehrmann, S. Höhme, D. Drasdo, J. Stewart, M. Schmidt. Systems biology, bioinformatics and medicine approaches to cancer progression outcomes. In: Cancer Systems Biology, Bioinformatics and Medicine, Springer , Dordrecht Heidelberg London New York. 2011. 297-308. Ed: Cesario, A. and Marcus, F.

2010 (2)

  • R. A. Dalloul, J. A. Long, A. V. Zimin, L. Aslam, K. Beal, L. Ann Blomberg, P. Bouffard, D. W. Burt, O. Crasta, R. P. Crooijmans, K. Cooper, R. A. Coulombe, S. De, M. E. Delany, J. B. Dodgson, J. J. Dong, C. Evans, K. M. Frederickson, P. Flicek, L. Florea, O. Folkerts, M. A. Groenen, T. T. Harkins, J. Herrero, S. Hoffmann, H. J. Megens, A. Jiang, P. de Jong, P. Kaiser, H. Kim, K. W. Kim, S. Kim, D. Langenberger, M. K. Lee, T. Lee, S. Mane, G. Marcais, M. Marz, A. P. McElroy, T. Modise, M. Nefedov, C. Notredame, I. R. Paton, W. S. Payne, G. Pertea, D. Prickett, D. Puiu, D. Qioa, E. Raineri, M. Ruffier, S. L. Salzberg, M. C. Schatz, C. Scheuring, C. J. Schmidt, S. Schroeder, S. M. Searle, E. J. Smith, J. Smith, T. S. Sonstegard, P. F. Stadler, H. Tafer, Z. J. Tu, C. P. Van Tassell, A. J. Vilella, K. P. Williams, J. A. Yorke, L. Zhang, H. B. Zhang, X. Zhang, Y. Zhang, K. M. Reed. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol. 2010. 8:
  • S. Findeiss, C. Schmidtke, P. F. Stadler, U. Bonas. A novel family of plasmid-transferred anti-sense ncRNAs. RNA Biol. 2010. 7: 120-4.

2009 (2)

  • M.v. Bergen, A. Eidner, F. Schmidt, J. Murugaiyan, H. Wirth, H. Binder, T. Maier, U. Roesler. Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS. PROTEOMICS - CLINICAL APPLICATIONS. 2009. 3: 774-784.
  • H. Schmidt, H. Taubert, H. Lange, K. Kriese, W. D. Schmitt, S. Hoffmann, F. Bartel, S. Hauptmann. Small polydispersed circular DNA contains strains of mobile genetic elements and occurs more frequently in permanent cell lines of malignant tumors than in normal lymphocytes. Oncol Rep. 2009. 22: 393-400.

MISCELLANEOUS