oposSOM-BROWSER – ANALYTICS TOOL

oposSOM is a comprehensive data analysis software combining diversity analyses, biomarker selection, functional information mining, and visualization to the machine learning based ‘high-dimensional data portraying’.

CONTACT

Dr. Henry Loeffler-Wirth

CITATIONS

Loeffler-Wirth, H., Reikowski, J., Hakobyan, S., Wagner, J. & Binder, H.: oposSOM-Browser: An interactive tool to explore omics data landscapes in health science. BMC Bioinformatics 2020

Schmidt, M., Avagyan, S., Reiche, K., Binder, H.* & Loeffler-Wirth, H.: An interactive spatial transcriptomics browser tool for expression, function and ligand-receptor-interaction mapping. Current Issues in Molecular Biology 2024

 

HIGHLIGHT DATA SETS

Sebaceous gland

Melanoma

Lymphoma

Spatial Transcriptomics

Spatial Transcriptomics

Bulk Transcriptome

ALL AVAILABLE DATA SETS

Blood (healthy cohort)Bulk Transcriptomestart browsing
Blood (CAR-T cell therapy; Sheih et al.)Single-cell Transcriptomestart browsing
Blood (CAR-T cell therapy; Deng et al.)Single-cell Transcriptomestart browsing
Colorectal cancer (tumor samples)Bulk Transcriptome   start browsing
Colorectal cancer (tumor samples)Bulk Transcriptomestart browsing
Colorectal cancerSpatial Transcriptomicsstart browsing
Colorectal cancerSpatial Transcriptomicsstart browsing
Duodenum (coeliac disease)Bulk Transcriptomestart browsing
FibroblastsSingle-cell Transcriptomestart browsing
Liver (metastases)Bulk Transcriptomestart browsing
LymphomaBulk Transcriptomestart browsing
Glioma (low grade)Bulk Transcriptomestart browsing
Glioma (low grade)Methylomestart browsing
Glioma (grade 1-4)Bulk Transcriptomestart browsing
Meibomian glandSpatial Transcriptomicsstart browsing
Melanoma (plus Naevi)Bulk Transcriptomestart browsing
Melanoma (plus Naevi)Single-cell Transcriptomestart browsing
MelanomaSpatial Transcriptomicsstart browsing
PneumoniaBulk Transcriptomestart browsing
Sebaceous glandSpatial Transcriptomicsstart browsing
Brain (healthy mouse)Spatial Transcriptomicsstart browsing
Brain (Thy1-wt & -ko, mouse)   Single-cell Transcriptomics   start browsing
Human genome atlasGenome (SNPs)start browsing
SARS-Cov2 virus atlasGEnome (SNVs)start browsing